Publications

12. Fouts DE, Rasko DA, Cer RZ, Jiang L, Fedorova NB, Shvartsbeyn A, Vamathevan JJ, Tallon L, Althoff R, Arbogast TS, Fadrosh DW, Read TD, Gill SR. (2006). Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry. Journal of Bacteriology 188(9):3402-8.

11. Gill SR, Fouts DE, Archer GL, Mongodin EF, Deboy RT, Ravel J, Paulsen IT, Kolonay JF, Brinkac L, Beanan M, Dodson RJ, Daugherty SC, Madupu R, Angiuoli SV, Durkin AS, Haft DH, Vamathevan J, Khouri H, Utterback T, Lee C, Dimitrov G, Jiang L, Qin H, Weidman J, Tran K, Kang K, Hance IR, Nelson KE, Fraser CM. (2005). Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. Journal of Bacteriology 187(7):2426-38.

10. Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, Vamathevan J, Miranda M, Anderson IJ, Fraser JA, Allen JE, Bosdet IE, Brent MR, Chiu R, Doering TL, Donlin MJ, D'Souza CA, Fox DS, Grinberg V, Fu J, Fukushima M, Haas BJ, Huang JC, Janbon G, Jones SJ, Koo HL, Krzywinski MI, Kwon-Chung JK, Lengeler KB, Maiti R, Marra MA, Marra RE, Mathewson CA, Mitchell TG, Pertea M, Riggs FR, Salzberg SL, Schein JE, Shvartsbeyn A, Shin H, Shumway M, Specht CA, Suh BB, Tenney A, Utterback TR, Wickes BL, Wortman JR, Wye NH, Kronstad JW, Lodge JK, Heitman J, Davis RW, Fraser CM, Hyman RW. (2005). The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. Science 307(5713):1321-4.

9. Wu, M., Sun, L.V., Vamathevan, J., Riegler, M., Deboy, R., Brownlie, J.C., McGraw, E.A., Martin, W., Esser, C., Ahmadinejad, N., Wiegand, C., Madupu, R., Beanan, M.J., Brinkac, L.M., Daugherty, S.C., Durkin, A.S., Kolonay, J.F., Nelson, W.C., Mohamoud, Y., Lee, P., Berry, K., Young, M.B., Utterback, T., Weidman, J., Nierman, W.C., Paulsen, I.T., Nelson, K.E., Tettelin, H., O'Neill, S.L. and Eisen, J.A. (2004). Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements. PLoS Biol 2(3): E69.

8. Paulsen, I.T., Banerjei, L., Myers, G.S., Nelson, K.E., Seshadri, R., Read, T.D., Fouts, D.E., Eisen, J.A., Gill, S.R., Heidelberg, J.F., Tettelin, H., Dodson, R.J., Umayam, L., Brinkac, L., Beanan, M., Daugherty, S., DeBoy, R.T., Durkin, S., Kolonay, J., Madupu, R., Nelson, W., Vamathevan, J., Tran, B., Upton, J., Hansen, T., Shetty, J., Khouri, H., Utterback, T., Radune, D., Ketchum, K.A., Dougherty, B.A. and Fraser, C.M. (2003). Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science 299(5615): 2071-4.

7. Heidelberg, J.F., Paulsen, I.T., Nelson, K.E., Gaidos, E.J., Nelson, W.C., Read, T.D., Eisen, J.A., Seshadri, R., Ward, N., Methe, B., Clayton, R.A., Meyer, T., Tsapin, A., Scott, J., Beanan, M., Brinkac, L., Daugherty, S., DeBoy, R.T., Dodson, R.J., Durkin, A.S., Haft, D.H., Kolonay, J.F., Madupu, R., Peterson, J.D., Umayam, L.A., White, O., Wolf, A.M., Vamathevan, J., Weidman, J., Impraim, M., Lee, K., Berry, K., Lee, C., Mueller, J., Khouri, H., Gill, J., Utterback, T.R., McDonald, L.A., Feldblyum, T.V., Smith, H.O., Venter, J.C., Nealson, K.H. and Fraser, C.M. (2002). Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nature Biotechnology 20(11): 1118-23.

6. Eisen, J.A., Nelson, K.E., Paulsen, I.T., Heidelberg, J.F., Wu, M., Dodson, R.J., Deboy, R., Gwinn, M.L., Nelson, W.C., Haft, D.H., Hickey, E.K., Peterson, J.D., Durkin, A.S., Kolonay, J.L., Yang, F., Holt, I., Umayam, L.A., Mason, T., Brenner, M., Shea, T.P., Parksey, D., Nierman, W.C., Feldblyum, T.V., Hansen, C.L., Craven, M.B., Radune, D., Vamathevan, J., Khouri, H., White, O., Gruber, T.M., Ketchum, K.A., Venter, J.C., Tettelin, H., Bryant, D.A. and Fraser, C.M. (2002). The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. PNAS 99(14): 9509-14.

5. Nierman, W.C., Feldblyum, T.V., Laub, M.T., Paulsen, I.T., Nelson, K.E., Eisen, J., Heidelberg, J.F., Alley, M.R., Ohta, N., Maddock, J.R., Potocka, I., Nelson, W.C., Newton, A., Stephens, C., Phadke, N.D., Ely, B., DeBoy, R.T., Dodson, R.J., Durkin, A.S., Gwinn, M.L., Haft, D.H., Kolonay, J.F., Smit, J., Craven, M.B., Khouri, H., Shetty, J., Berry, K., Utterback, T., Tran, K., Wolf, A., Vamathevan, J., Ermolaeva, M., White, O., Salzberg, S.L., Venter, J.C., Shapiro, L. and Fraser, C.M. (2001). Complete genome sequence of Caulobacter crescentus. PNAS 98(7): 4136-41.

4. Heidelberg, J.F., Eisen, J.A., Nelson, W.C., Clayton, R.A., Gwinn, M.L., Dodson, R.J., Haft, D.H., Hickey, E.K., Peterson, J.D., Umayam, L., Gill, S.R., Nelson, K.E., Read, T.D., Tettelin, H., Richardson, D., Ermolaeva, M.D., Vamathevan, J., Bass, S., Qin, H., Dragoi, I., Sellers, P., McDonald, L., Utterback, T., Fleishmann, R.D., Nierman, W.C. and White, O. (2000). DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 406(6795): 477-83.

3. Tettelin, H., Saunders, N.J., Heidelberg, J., Jeffries, A.C., Nelson, K.E., Eisen, J.A., Ketchum, K.A., Hood, D.W., Peden, J.F., Dodson, R.J., Nelson, W.C., Gwinn, M.L., DeBoy, R., Peterson, J.D., Hickey, E.K., Haft, D.H., Salzberg, S.L., White, O., Fleischmann, R.D., Dougherty, B.A., Mason, T., Ciecko, A., Parksey, D.S., Blair, E., Cittone, H., Clark, E.B., Cotton, M.D., Utterback, T.R., Khouri, H., Qin, H., Vamathevan, J., Gill, J., Scarlato, V., Masignani, V., Pizza, M., Grandi, G., Sun, L., Smith, H.O., Fraser, C.M., Moxon, E.R., Rappuoli, R. and Venter, J.C. (2000). Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science 287(5459): 1809-15.

2. White, O., Eisen, J.A., Heidelberg, J.F., Hickey, E.K., Peterson, J.D., Dodson, R.J., Haft, D.H., Gwinn, M.L., Nelson, W.C., Richardson, D.L., Moffat, K.S., Qin, H., Jiang, L., Pamphile, W., Crosby, M., Shen, M., Vamathevan, J.J., Lam, P., McDonald, L., Utterback, T., Zalewski, C., Makarova, K.S., Aravind, L., Daly, M.J., Minton, K.W., Fleischmann, R.D., Ketchum, K.A., Nelson, K.E., Salzberg, S., Smith, H.O., Venter, J.C. and Fraser, C.M. (1999). Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. Science 286(5444): 1571-7.

1. Vamathevan, J. J. and Humphery-Smith, I. (1996) DNA Sequencing and Genome Sequencing Initiatives. Testing Technology March: 34-37.

Last modified 18 July, 2006