INDELible

[TYPE] block

• This block tells INDELible whether it is simulating under nucleotide, amino-acid or codon models and whether to use method 1 or method 2 (see paper).
• Both methods give identical results but in some situations one will be faster than the other.
• It is important that this block comes first in the control file because it is used to check all subsequent input in that file for user typos.

Example Usage:

• [TYPE] NUCLEOTIDE 1
  

• [TYPE] NUCLEOTIDE 2
  

• [TYPE] AMINOACID 1
  

• [TYPE] AMINOACID 2
  

• [TYPE] CODON 1
  

• [TYPE] CODON 2